Intro
Welcome to the 3DM walkthrough. A 3DM system is a data integration platform, we collect and integrate data about a protein superfamily.
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Another thing you can do here is visualise this data in yasara - to do that click on the little button with a protein helix symbol 
. You will be redirected to the visualize page, but don't do it for now, we'll get to it later.
Alignment position
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details pages
You can also view protein data that's mapped onto available for a certain specific position in the alignment (protein residue data from all aligned proteins on a structurally conserved position) - the alignment position pages can be accessed in multiple ways, e.g.
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In the case of search proteins by position motif, we're looking for specific motifs on specific positions - for example we might want to find all proteins that have a tyrosine on alignment position 35 and an isoleucine on alignment position 90, then we will use the search term "Y35,I90"
Advanced
Numbering schemes
You can simplify your work with the protein of interest even more by creating a custom numbering scheme - that will cause the alignment positions to be renumbered to match the residue numbering of your protein.
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