3DM uses a structure based MSA to connect the proteins of a superfamily. Via the alignment it is possible to transfer residue and alignment data to other proteins or structures.
In the alignment viewer you can view and analyse this alignment.
By default, a superfamily alignment only shows the consensus of each alignment subfamily. A subfamily is usually based on a protein structure and connected to other alignment subfamilies via the structural alignment.
The consensus can be expanded to view the protein sequences present in a subfamily.
Show proteins | Hide proteins | Protein selection | Variable regions | Protein search | Zoom out | Zoom in | Settings | |
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Consensus view | ||||||||
Subfamily view |
Only available in consensus view. |
Show or hide first 15 proteins of all subfamilies.
Select what type of proteins should be shown:
Only available in subfamily view. |