This is a guide intended to help you install and manage the Bio-Prodict 3DM PyMol Plugin in PyMol 2.
PyMol includes an easy-to-use plugin repository that lets you effortlessly download and install the Bio-Prodict 3DM PyMol Plugin. The latest stable version number can be found here.
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1. Navigate to the location where you installed PyMol in Explorer. This is likely C:\Program Files\YASARA .
2. Inside this directory, navigate to plg\bioprodict
3. Open the config.json file in notepad (or your favorite plain text editor)
4. Find the line that says: "verify_https": true , change true to false to disable this setting.
5. Save the file.
6. Restart YASARA, the plugin should now work.
I encounter an XQuartz error
XQuartz is a compatibility layer for OSX/MacOS that is required to launch the 3DM plugin. Please install XQuarts using the instructions on their website: https://www.xquartz.org/
I installed XQuartz and restarted my Mac, but I still get XQuartz errors
Make sure that your X11 libraries are installed correctly. You may need to symlink the install directory to the directory expected by PyMOL. This can be done by
- Opening a Terminal
- Typing: sudo ln -s /usr/X11 /usr/local/opt/libx11
- Pressing Enter
- Entering your password
- Restarting PyMol