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The 3DM system wide search by sequence helps you to identify the best 3DM system for your protein.
The identified 3DM systems are shown together with a domain annotation of your query sequence so that you can easily see which domains are covered by the 3DM system hits.
By default only the top 3DM system is shown for each distinct protein region:
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A detailed view is available for each system hit that provides more information and shortcuts:
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How it works
This search first identifies the closest 3DM systems (by a an HMM searchscan) and then performs a BLAST search against the selected identified systems to identify find the closest proteins in those 3DM Systems.
The resulting 3DM systems are shown in the system hits box, together with a domain annotation of your query sequence so that you can easily see which 3DM systems covers which domain.By default only a selection of the top 3DM systems are shown to give a better overviewtop system is identified by sorting the system hits in this order:
Subfamily count and then on Sequence cluster count.