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This is a guide intended to help you install and manage the Bio-Prodict 3DM PyMol Plugin in PyMol 2.
PyMol includes an easy-to-use plugin repository that lets you effortlessly download and install the Bio-Prodict 3DM PyMol Plugin. The latest stable version number can be found here.

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It may be that your company uses a self signed certificate to encrypt traffic inside the network. You must disable SSL verification for YASARA 3DM to work. For security reasons we do not recommend this recourse for computers that may move outside the company network.


1. Navigate to the location where you installed PyMol in Explorer. This is likely C:\Program Files\YASARA .
2. Inside this directory, navigate to plg\bioprodict
3. Open the config.json file in notepad (or your favorite plain text editor)
4. Find the line that says: "verify_https": true , change true to false to disable this setting.
5. Save the file.
6. Restart YASARA, the plugin should now work.


I am using MacOS and I can't copy/paste my credentials.

XQuartz binds copy/paste specifically to Ctrl+C/Ctrl+V as opposed to Cmd+C/Cmd+V.


I encounter an XQuartz error

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