What are
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private proteins
It is possible to add your own 'customprivate' proteins to a 3DM system. Any protein sequence that you wish to add manually is considered a 'customprivate' protein. By default custom private proteins are private and only visible to you.
Custom Private proteins are stored separately and can be connected to different 3DM systems.
How do I add a
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private protein?
Custom Private proteins can be created and/or connected to a 3DM system from the custom private protein page within a 3DM system (3DM → System → Custom private proteins).
Functionality
Available functionality for custom private proteins (more features are under development):
- View them in the alignment.
- View custom private proteins in a phylogenetic tree of the 3DM system.
- Create structural models of custom private proteins connected to a 3DM system.
- Project 3DM data on the custom private protein sequence (see Sequence projection).
- Create a numbering scheme based on the custom private protein sequence.
Notes concerning custom private proteins:
- Custom private proteins are visible only to you or the user group you share them with.
- 3DM data can be projected on custom private proteins but they themselves are not part of the statistics.
- It can be difficult to connect (align) distantly related proteins to a 3DM system, (you are advised to check the alignment quality for such proteins).
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